.calculate_control_collinearity	dot-calculate_control_collinearity
.calculate_control_uds_use	dot-calculate_control_uds_use
.calculate_fixed_collinearity_vif_magnitude_sif	dot-calculate_fixed_collinearity_vif_magnitude_sif
adjust_control_reference	adjust_control_reference
build_reference_matrix	build_reference_matrix
calculate_af_repertoire_qc_metrics	calculate_af_repertoire_qc_metrics
calculate_control_qc_metrics	calculate_control_qc_metrics
calculate_cosine_similarity_matrix	calculate_cosine_similarity_matrix
calculate_nps	calculate_nps
calculate_similarity_matrix	calculate_similarity_matrix
calculate_unstained_robust_spread	calculate_unstained_robust_spread
calc_residuals	calc_residuals
check_for_updates	spectreasy_updates
collect_control_report_bundle	collect_control_report_bundle
collect_control_report_data	collect_control_report_data
collect_sample_report_bundle	collect_sample_report_bundle
collect_sample_report_data	collect_sample_report_data
control_qc_modules_default	control_qc_modules_default
control_qc_reports_default	control_qc_reports_default
create_control_file	create_control_file
derive_unmixing_matrix	derive_unmixing_matrix
export_qc_report_pdf	export_qc_report_pdf
extract_control_spectra	extract_control_spectra
gate_controls	gate_controls
get_control_spectra	get_control_spectra
get_fluorophore_patterns	get_fluorophore_patterns
get_sorted_detectors	get_sorted_detectors
inspect_fcs_provenance	inspect_fcs_provenance
inspect_spectreasy_provenance	inspect_spectreasy_provenance
install_qc_dependencies	install_qc_dependencies
launch	launch
plot_compensaid_matrix	plot_compensaid_matrix
plot_compensaid_pair	plot_compensaid_pair
plot_control_compensaid_matrix	plot_control_compensaid_matrix
plot_cosine_similarity_matrix	plot_cosine_similarity_matrix
plot_nps	plot_nps
plot_sample_rms_residuals	plot_sample_rms_residuals
plot_similarity_matrix	plot_similarity_matrix
plot_spectra	plot_spectra
plot_unmixing_matrix	plot_unmixing_matrix
plot_unmixing_scatter_matrix	plot_unmixing_scatter_matrix
qc_controls	qc_controls
qc_samples	qc_samples
read_control_extraction	read_control_extraction
read_control_reference	read_control_reference
read_sample_run_manifest	read_sample_run_manifest
render_qc_html_report	render_qc_html_report
sample_qc_modules_default	sample_qc_modules_default
sample_qc_reports_default	sample_qc_reports_default
save_unmixing_matrix	save_unmixing_matrix
spectreasy_capabilities	spectreasy_capabilities
spectreasy_example_data	spectreasy_example_data
spectreasy_gui	launch
spectreasy_gui_runtime	spectreasy_gui_runtime
spectreasy_native_map_data_to_codes_cpp	spectreasy_native_map_data_to_codes_cpp
spectreasy_native_som_train_batch_cpp	spectreasy_native_som_train_batch_cpp
supported_cytometers	supported_cytometers
unmix_controls	unmix_controls
unmix_samples	unmix_samples
update_spectreasy	spectreasy_updates
validate_control_file_mapping	validate_control_file_mapping
validate_sample_run	validate_sample_run
verify_spectreasy_provenance	verify_spectreasy_provenance
