S3method(as.data.frame,spectreasy_unmixed_results)
useDynLib(spectreasy, .registration=TRUE)
importFrom(Rcpp,evalCpp)
importFrom(RcppParallel,defaultNumThreads)
importFrom(ps,ps_handle)
importFrom(ps,ps_is_running)
importFrom(grDevices,chull)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(stats,density)
importFrom(stats,mad)
importFrom(stats,median)
importFrom(stats,qchisq)
importFrom(stats,quantile)
importFrom(stats,setNames)
importFrom(stats,var)
importFrom(utils,capture.output)
importFrom(utils,head)

export(unmix_controls)
export(adjust_control_reference)
export(build_reference_matrix)
export(calc_residuals)
export(collect_control_report_data)
export(collect_sample_report_data)
export(collect_control_report_bundle)
export(collect_sample_report_bundle)
export(control_qc_modules_default)
export(sample_qc_modules_default)
export(control_qc_reports_default)
export(sample_qc_reports_default)
export(export_qc_report_pdf)
export(install_qc_dependencies)
export(inspect_fcs_provenance)
export(inspect_spectreasy_provenance)
export(plot_compensaid_matrix)
export(plot_control_compensaid_matrix)
export(plot_compensaid_pair)
export(calculate_similarity_matrix)
export(calculate_cosine_similarity_matrix)
export(calculate_control_qc_metrics)
export(calculate_af_repertoire_qc_metrics)
export(calculate_nps)
export(calculate_unstained_robust_spread)
export(check_for_updates)
export(create_control_file)
export(extract_control_spectra)
export(derive_unmixing_matrix)
export(gate_controls)
export(qc_samples)
export(qc_controls)
export(render_qc_html_report)
export(get_control_spectra)
export(get_fluorophore_patterns)
export(get_sorted_detectors)
export(launch)
export(spectreasy_gui_runtime)
export(plot_nps)
export(plot_sample_rms_residuals)
export(plot_similarity_matrix)
export(plot_cosine_similarity_matrix)
export(plot_spectra)
export(plot_unmixing_matrix)
export(plot_unmixing_scatter_matrix)
export(save_unmixing_matrix)
export(spectreasy_example_data)
export(spectreasy_capabilities)
export(spectreasy_gui)
export(supported_cytometers)
export(unmix_samples)
export(read_control_reference)
export(read_control_extraction)
export(read_sample_run_manifest)
export(validate_sample_run)
export(update_spectreasy)
export(verify_spectreasy_provenance)
export(validate_control_file_mapping)
