Spectreasy internal SOM core
============================

The files src/som_core.cpp and R/som_core.R contain a modified, reduced
version of EmbedSOM 2.2.1's batch SOM and nearest-code mapping implementation:

  https://github.com/exaexa/EmbedSOM/tree/v2.2.1
  commit d697bc9f1526903cb5a0a163b6a51fc209dadb04

Copyright (C) 2018-2020 Mirek Kratochvil <exa.exa@gmail.com>.
Parts are based on FlowSOM, Copyright (C) 2016-2019 Sofie Van Gassen et al.,
and code originally by Ron Wehrens.

Those copied portions remain licensed under the GNU General Public License,
version 3 or (at your option) any later version. The containing Spectreasy
package is AGPL-3-or-later; the licenses are compatible under section 13 of
GPL-3. See https://www.gnu.org/licenses/gpl-3.0.html.

Spectreasy PeacoQC mask adapter
===============================

R/reference_af_phenograph.R contains a narrow mask-only adapter derived from
the following supported PeacoQC sources:

  PeacoQC 1.18.0, Bioconductor RELEASE_3_21 revision 9f59f69:

    https://github.com/saeyslab/PeacoQC/blob/9f59f69/R/PeacoQC_helper_functions.R

  PeacoQC 1.22.0, Bioconductor RELEASE_3_23 revision b86dec8:

    https://github.com/saeyslab/PeacoQC/blob/b86dec8/R/PeacoQC_helper_functions.R

The derived portions remain licensed under the GNU General Public License,
version 3 or (at your option) any later version. The containing Spectreasy
package is AGPL-3-or-later; the licenses are compatible under section 13 of
GPL-3. See https://www.gnu.org/licenses/gpl-3.0.html.

Spectreasy CompensAID control adapter
=====================================

R/compensaid_qc.R contains a narrow source-targeted adapter derived from
CompensAID 1.0.0, dependency revision 80ad495, and pinned to this upstream
source blob:

  https://github.com/Olsman/CompensAID/blob/d03238c0a1adf70099a7c267cd46b27702cdd0b5/R/CompensAID.R

The derived portions remain licensed under the GNU General Public License,
version 3 or (at your option) any later version. The containing Spectreasy
package is AGPL-3-or-later; the licenses are compatible under section 13 of
GPL-3. See https://www.gnu.org/licenses/gpl-3.0.html.
